PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057605
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 107aa    MW: 12136.2 Da    PI: 9.9036
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057605genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.56.3e-1220511041
                          HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifs 41
                           v  s+ ++ ++KKA+EL +LC++++aviifs
  PGSC0003DMP400057605 20 GVKISQKQKSLFKKANELFILCGIQIAVIIFS 51
                          56678999***********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.732363IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-141089IPR002100Transcription factor, MADS-box
SMARTSM004320.00611362IPR002100Transcription factor, MADS-box
PfamPF003197.5E-102452IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MESKNSNVDL ALAKEKRVEG VKISQKQKSL FKKANELFIL CGIQIAVIIF SIGRQPILFG  60
TPDVETIVQQ FVEANHPTAP RFYMKMKKNE EEKKEKGKFV EDNITH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-104HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055398.11e-50PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DAL32e-72M1DAL3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000859305e-72(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-13AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]